| Subject Chromosome |
Query Chromosome |
Alignment Details |
| Subject Chromosome |
Subject
Chromosome Start Coordinate |
Subject
Chromosome End Coordinate |
Subject
Component |
Subject
Component Start Coordinate |
Subject
Component End Coordinate |
Subject
Alignment Orientation |
Subject
Length |
Subject
Sequence Categorization |
Query
Chromosome |
Query
Chromosome Start Coordinate |
Query
Chromosome End Coordinate |
Query
Component |
Query
Component Start Coordinate |
Query
Component End Coordinate |
Query
Alignment Orientation |
Query
Length |
Query
Sequence Categorization |
PatternHunter
Alignment Score |
PatternHunter
Alignment Identity |
PatternHunter
Alignment Gaps |
| UNMATCHED |
1 |
1120 |
|
|
|
|
1120 |
UNMATCHED |
DELETION |
1 |
1 |
|
|
|
|
0 |
DELETION |
|
|
|
| GAP |
1121 |
51120 |
|
|
|
|
50000 |
GAP |
NO_GAP |
1 |
1 |
|
|
|
|
0 |
NO_GAP |
|
|
|
| CRA_TCAGchr7.v1:51121-96590 |
51121 |
73340 |
AC097647.2:1-45470|+ |
1 |
22220 |
+ |
22220 |
|
NCBI_chr7_b31:1-22220 |
1 |
22220 |
AC097647.2:1-22220|+ |
1 |
22220 |
+ |
22220 |
|
22220 |
22220/22220 (100%) |
0/22220 (0%) |
| CRA_TCAGchr7.v1:51121-96590 |
73341 |
84263 |
AC097647.2:1-45470|+ |
22221 |
33143 |
+ |
10923 |
|
NCBI_chr7_b31:22221-33143 |
22221 |
33143 |
AC097645.2:1-10923|+ |
1 |
10923 |
+ |
10923 |
|
10923 |
10923/10923 (100%) |
0/10923 (0%) |
| CRA_TCAGchr7.v1:51121-96590 |
84264 |
96590 |
AC097647.2:1-45470|+ |
33144 |
45470 |
+ |
12327 |
|
NCBI_chr7_b31:33144-72470 |
33144 |
45470 |
AC097646.2:1-39327|+ |
1 |
12327 |
+ |
12327 |
|
12327 |
12327/12327 (100%) |
0/12327 (0%) |
| CRA_TCAGchr7.v1:96591-105103 |
96591 |
105103 |
AC112517.1:33129-41641|+ |
33129 |
41641 |
+ |
8513 |
|
NCBI_chr7_b31:33144-72470 |
45471 |
53983 |
AC097646.2:1-39327|+ |
12328 |
20840 |
+ |
8513 |
|
8513 |
8513/8513 (100%) |
0/8513 (0%) |
| CRA_TCAGchr7.v1:105104-114912 |
105104 |
114912 |
AC097645.2:31764-41572|+ |
31764 |
41572 |
+ |
9809 |
|
NCBI_chr7_b31:33144-72470 |
53984 |
63792 |
AC097646.2:1-39327|+ |
20841 |
30649 |
+ |
9809 |
|
9809 |
9809/9809 (100%) |
0/9809 (0%) |
| CRA_TCAGchr7.v1:114913-127224 |
114913 |
123590 |
AC097646.2:30650-42961|+ |
30650 |
39327 |
+ |
8678 |
|
NCBI_chr7_b31:33144-72470 |
63793 |
72470 |
AC097646.2:1-39327|+ |
30650 |
39327 |
+ |
8678 |
|
8678 |
8678/8678 (100%) |
0/8678 (0%) |
| CRA_TCAGchr7.v1:123591-127224 |
123591 |
127224 |
|
|
|
|
3634 |
|
NCBI_chr7_b31:72471-76290 |
72471 |
76290 |
|
|
|
|
3820 |
|
|
|
|
| CRA_TCAGchr7.v1:127225-157442 |
127225 |
157442 |
AC093686.6:3821-34038|+ |
3821 |
34038 |
+ |
30218 |
|
NCBI_chr7_b31:72471-106508 |
76291 |
106508 |
AC093686.6:1-34038|+ |
3821 |
34038 |
+ |
30218 |
|
30218 |
30218/30218 (100%) |
0/30218 (0%) |
| CRA_TCAGchr7.v1:157443-170367 |
157443 |
170367 |
AC093666.4:1-12925|+ |
1 |
12925 |
+ |
12925 |
|
NCBI_chr7_b31:106509-119433 |
106509 |
119433 |
AC093666.4:1-12925|+ |
1 |
12925 |
+ |
12925 |
|
12925 |
12925/12925 (100%) |
0/12925 (0%) |
| CRA_TCAGchr7.v1:170368-177612 |
170368 |
177612 |
AC093627.4:1-7245|+ |
1 |
7245 |
+ |
7245 |
|
NCBI_chr7_b31:119434-298702 |
119434 |
126678 |
AC093627.4:1-179269|+ |
1 |
7245 |
+ |
7245 |
|
7245 |
7245/7245 (100%) |
0/7245 (0%) |
| CRA_TCAGchr7.v1:177613-656460 |
177613 |
217562 |
GA_x39G1GC42LN_4:1-478848|+ |
1 |
39950 |
+ |
39950 |
|
NCBI_chr7_b31:119434-298702 |
126679 |
166636 |
AC093627.4:1-179269|+ |
7246 |
47203 |
+ |
39958 |
|
39715 |
39863/39966 (99%) |
24/39966 (0%) |
| UNMATCHED |
217563 |
217568 |
|
|
|
|
6 |
UNMATCHED |
DELETION |
166619 |
166636 |
|
|
|
|
0 |
DELETION |
|
|
|
| CRA_TCAGchr7.v1:177613-656460 |
217569 |
249724 |
GA_x39G1GC42LN_4:1-478848|+ |
39957 |
72112 |
+ |
32156 |
|
NCBI_chr7_b31:119434-298702 |
166619 |
198822 |
AC093627.4:1-179269|+ |
47186 |
79389 |
+ |
32204 |
|
31679 |
31981/32218 (99%) |
76/32218 (0%) |
| CRA_TCAGchr7.v1:177613-656460 |
248984 |
256073 |
GA_x39G1GC42LN_4:1-478848|+ |
71372 |
78461 |
+ |
7090 |
|
NCBI_chr7_b31:119434-298702 |
198504 |
205629 |
AC093627.4:1-179269|+ |
79071 |
86196 |
+ |
7126 |
|
6968 |
7062/7126 (99%) |
36/7126 (0%) |
| DELETION |
256068 |
256073 |
|
|
|
|
0 |
DELETION |
UNMATCHED |
205630 |
205721 |
|
|
|
|
96 |
UNMATCHED |
|
|
|
| CRA_TCAGchr7.v1:177613-656460 |
256068 |
263285 |
GA_x39G1GC42LN_4:1-478848|+ |
78456 |
85673 |
+ |
7218 |
|
NCBI_chr7_b31:119434-298702 |
205722 |
212929 |
AC093627.4:1-179269|+ |
86289 |
93496 |
+ |
7208 |
|
7099 |
7168/7222 (99%) |
18/7222 (0%) |
| CRA_TCAGchr7.v1:177613-656460 |
263118 |
271468 |
GA_x39G1GC42LN_4:1-478848|+ |
85506 |
93856 |
+ |
8351 |
|
NCBI_chr7_b31:119434-298702 |
212730 |
221087 |
AC093627.4:1-179269|+ |
93297 |
101654 |
+ |
8358 |
|
8240 |
8307/8359 (99%) |
9/8359 (0%) |
| CRA_TCAGchr7.v1:177613-656460 |
271343 |
274939 |
GA_x39G1GC42LN_4:1-478848|+ |
93731 |
97327 |
+ |
3597 |
|
NCBI_chr7_b31:119434-298702 |
220917 |
224514 |
AC093627.4:1-179269|+ |
101484 |
105081 |
+ |
3598 |
|
3500 |
3559/3603 (98%) |
11/3603 (0%) |
| CRA_TCAGchr7.v1:177613-656460 |
274768 |
286157 |
GA_x39G1GC42LN_4:1-478848|+ |
97156 |
108545 |
+ |
11390 |
|
NCBI_chr7_b31:119434-298702 |
224183 |
235572 |
AC093627.4:1-179269|+ |
104750 |
116139 |
+ |
11390 |
|
11287 |
11353/11394 (99%) |
8/11394 (0%) |
| CRA_TCAGchr7.v1:177613-656460 |
285949 |
305634 |
GA_x39G1GC42LN_4:1-478848|+ |
108337 |
128022 |
+ |
19686 |
|
NCBI_chr7_b31:119434-298702 |
235488 |
255170 |
AC093627.4:1-179269|+ |
116055 |
135737 |
+ |
19683 |
|
19549 |
19637/19690 (99%) |
11/19690 (0%) |
| UNMATCHED |
305635 |
309140 |
|
|
|
|
3506 |
UNMATCHED |
DELETION |
255136 |
255170 |
|
|
|
|
0 |
DELETION |
|
|
|
| CRA_TCAGchr7.v1:177613-656460 |
309141 |
310345 |
GA_x39G1GC42LN_4:1-478848|+ |
131529 |
132733 |
+ |
1205 |
|
NCBI_chr7_b31:119434-298702 |
255136 |
256337 |
AC093627.4:1-179269|+ |
135703 |
136904 |
+ |
1202 |
|
1166 |
1188/1205 (98%) |
3/1205 (0%) |
| CRA_TCAGchr7.v1:177613-656460 |
310345 |
317741 |
GA_x39G1GC42LN_4:1-478848|+ |
132733 |
140129 |
+ |
7397 |
|
NCBI_chr7_b31:119434-298702 |
256268 |
263694 |
AC093627.4:1-179269|+ |
136835 |
144261 |
+ |
7427 |
|
7212 |
7331/7430 (98%) |
36/7430 (0%) |
| CRA_TCAGchr7.v1:177613-656460 |
317636 |
322264 |
GA_x39G1GC42LN_4:1-478848|+ |
140024 |
144652 |
+ |
4629 |
|
NCBI_chr7_b31:119434-298702 |
263505 |
268153 |
AC093627.4:1-179269|+ |
144072 |
148720 |
+ |
4649 |
|
4531 |
4595/4649 (98%) |
20/4649 (0%) |
| CRA_TCAGchr7.v1:177613-656460 |
321907 |
337748 |
GA_x39G1GC42LN_4:1-478848|+ |
144295 |
160136 |
+ |
15842 |
|
NCBI_chr7_b31:119434-298702 |
267946 |
283786 |
AC093627.4:1-179269|+ |
148513 |
164353 |
+ |
15841 |
|
15781 |
15817/15843 (99%) |
3/15843 (0%) |
| DELETION |
337634 |
337748 |
|
|
|
|
0 |
DELETION |
UNMATCHED |
283787 |
283812 |
|
|
|
|
139 |
UNMATCHED |
|
|
|
| CRA_TCAGchr7.v1:177613-656460 |
337634 |
352523 |
GA_x39G1GC42LN_4:1-478848|+ |
160022 |
174911 |
+ |
14890 |
|
NCBI_chr7_b31:119434-298702 |
283813 |
298702 |
AC093627.4:1-179269|+ |
164380 |
179269 |
+ |
14890 |
|
14854 |
14872/14890 (99%) |
0/14890 (0%) |
| UNMATCHED |
352524 |
656460 |
|
|
|
|
303937 |
UNMATCHED |
DELETION |
298702 |
298703 |
|
|
|
|
0 |
DELETION |
|
|
|
| GAP |
656461 |
706460 |
|
|
|
|
50000 |
GAP |
GAP |
298703 |
348702 |
|
|
|
|
50000 |
GAP |
|
|
|
| UNMATCHED |
706461 |
779996 |
|
|
|
|
73536 |
UNMATCHED |
DELETION |
348702 |
348703 |
|
|
|
|
0 |
DELETION |
|
|
|
| CRA_TCAGchr7.v1:706461-1189758 |
779997 |
921504 |
GA_x39G1FKSFPU_4:1-483298|+ |
73537 |
215044 |
+ |
141508 |
|
NCBI_chr7_b31:348703-562952 |
348703 |
490197 |
AC099731.5:1-214250|+ |
1 |
141495 |
+ |
141495 |
|
141250 |
141415/141510 (99%) |
17/141510 (0%) |
| DELETION |
921204 |
921504 |
|
|
|
|
0 |
DELETION |
UNMATCHED |
490198 |
493658 |
|
|
|
|
3760 |
UNMATCHED |
|
|
|
| CRA_TCAGchr7.v1:706461-1189758 |
921204 |
974929 |
GA_x39G1FKSFPU_4:1-483298|+ |
214744 |
268469 |
+ |
53726 |
|
NCBI_chr7_b31:348703-562952 |
493659 |
547387 |
AC099731.5:1-214250|+ |
144957 |
198685 |
+ |
53729 |
|
53457 |
53637/53742 (99%) |
29/53742 (0%) |
| CRA_TCAGchr7.v1:706461-1189758 |
974791 |
976310 |
GA_x39G1FKSFPU_4:1-483298|+ |
268331 |
269850 |
+ |
1520 |
|
NCBI_chr7_b31:348703-562952 |
547189 |
548708 |
AC099731.5:1-214250|+ |
198487 |
200006 |
+ |
1520 |
|
1492 |
1506/1520 (99%) |
0/1520 (0%) |
| DELETION |
976310 |
976311 |
|
|
|
|
0 |
DELETION |
UNMATCHED |
548709 |
548763 |
|
|
|
|
55 |
UNMATCHED |
|
|
|
| CRA_TCAGchr7.v1:706461-1189758 |
976311 |
978322 |
GA_x39G1FKSFPU_4:1-483298|+ |
269851 |
271862 |
+ |
2012 |
|
NCBI_chr7_b31:348703-562952 |
548764 |
550774 |
AC099731.5:1-214250|+ |
200062 |
202072 |
+ |
2011 |
|
1961 |
1989/2012 (98%) |
1/2012 (0%) |
| CRA_TCAGchr7.v1:706461-1189758 |
978142 |
980655 |
GA_x39G1FKSFPU_4:1-483298|+ |
271682 |
274195 |
+ |
2514 |
|
NCBI_chr7_b31:348703-562952 |
550523 |
553030 |
AC099731.5:1-214250|+ |
201821 |
204328 |
+ |
2508 |
|
2396 |
2473/2515 (98%) |
8/2515 (0%) |
| CRA_TCAGchr7.v1:706461-1189758 |
980377 |
990844 |
GA_x39G1FKSFPU_4:1-483298|+ |
273917 |
284384 |
+ |
10468 |
|
NCBI_chr7_b31:348703-562952 |
552491 |
562952 |
AC099731.5:1-214250|+ |
203789 |
214250 |
+ |
10462 |
|
10357 |
10433/10469 (99%) |
8/10469 (0%) |
| CRA_TCAGchr7.v1:706461-1189758 |
990845 |
1001962 |
GA_x39G1FKSFPU_4:1-483298|+ |
284385 |
295502 |
+ |
11118 |
|
NCBI_chr7_b31:562953-757156 |
562953 |
574074 |
AC073957.7:1-194204|+ |
1 |
11122 |
+ |
11122 |
|
11056 |
11099/11122 (99%) |
4/11122 (0%) |
| CRA_TCAGchr7.v1:706461-1189758 |
1001536 |
1004139 |
GA_x39G1FKSFPU_4:1-483298|+ |
295076 |
297679 |
+ |
2604 |
|
NCBI_chr7_b31:562953-757156 |
574032 |
576647 |
AC073957.7:1-194204|+ |
11080 |
13695 |
+ |
2616 |
|
2531 |
2587/2618 (98%) |
16/2618 (0%) |
| DELETION |
1004137 |
1004139 |
|
|
|
|
0 |
DELETION |
UNMATCHED |
576648 |
576668 |
|
|
|
|
22 |
UNMATCHED |
|
|
|
| CRA_TCAGchr7.v1:706461-1189758 |
1004137 |
1020751 |
GA_x39G1FKSFPU_4:1-483298|+ |
297677 |
314291 |
+ |
16615 |
|
NCBI_chr7_b31:562953-757156 |
576669 |
593294 |
AC073957.7:1-194204|+ |
13717 |
30342 |
+ |
16626 |
|
16484 |
16575/16626 (99%) |
11/16626 (0%) |
| CRA_TCAGchr7.v1:706461-1189758 |
1020572 |
1023043 |
GA_x39G1FKSFPU_4:1-483298|+ |
314112 |
316583 |
+ |
2472 |
|
NCBI_chr7_b31:562953-757156 |
593285 |
595756 |
AC073957.7:1-194204|+ |
30333 |
32804 |
+ |
2472 |
|
2464 |
2468/2472 (99%) |
0/2472 (0%) |
| CRA_TCAGchr7.v1:706461-1189758 |
1022827 |
1026302 |
GA_x39G1FKSFPU_4:1-483298|+ |
316367 |
319842 |
+ |
3476 |
|
NCBI_chr7_b31:562953-757156 |
595630 |
599105 |
AC073957.7:1-194204|+ |
32678 |
36153 |
+ |
3476 |
|
3470 |
3473/3476 (99%) |
0/3476 (0%) |
| UNMATCHED |
1026303 |
1027393 |
|
|
|
|
1091 |
UNMATCHED |
DELETION |
599102 |
599105 |
|
|
|
|
0 |
DELETION |
|
|
|
| CRA_TCAGchr7.v1:706461-1189758 |
1027394 |
1036580 |
GA_x39G1FKSFPU_4:1-483298|+ |
320934 |
330120 |
+ |
9187 |
|
NCBI_chr7_b31:562953-757156 |
599102 |
608271 |
AC073957.7:1-194204|+ |
36150 |
45319 |
+ |
9170 |
|
9083 |
9145/9187 (99%) |
17/9187 (0%) |
| CRA_TCAGchr7.v1:706461-1189758 |
1036366 |
1046477 |
GA_x39G1FKSFPU_4:1-483298|+ |
329906 |
340017 |
+ |
10112 |
|
NCBI_chr7_b31:562953-757156 |
608019 |
618111 |
AC073957.7:1-194204|+ |
45067 |
55159 |
+ |
10093 |
|
9755 |
9969/10133 (98%) |
61/10133 (0%) |
| CRA_TCAGchr7.v1:706461-1189758 |
1045835 |
1049408 |
GA_x39G1FKSFPU_4:1-483298|+ |
339375 |
342948 |
+ |
3574 |
|
NCBI_chr7_b31:562953-757156 |
617805 |
621370 |
AC073957.7:1-194204|+ |
54853 |
58418 |
+ |
3566 |
|
3438 |
3514/3575 (98%) |
10/3575 (0%) |
| DELETION |
1049097 |
1049408 |
|
|
|
|
0 |
DELETION |
UNMATCHED |
621371 |
621517 |
|
|
|
|
457 |
UNMATCHED |
|
|
|
| CRA_TCAGchr7.v1:706461-1189758 |
1049097 |
1099621 |
GA_x39G1FKSFPU_4:1-483298|+ |
342637 |
393161 |
+ |
50525 |
|
NCBI_chr7_b31:562953-757156 |
621518 |
672049 |
AC073957.7:1-194204|+ |
58566 |
109097 |
+ |
50532 |
|
50356 |
50467/50533 (99%) |
9/50533 (0%) |
| CRA_TCAGchr7.v1:706461-1189758 |
1099390 |
1128625 |
GA_x39G1FKSFPU_4:1-483298|+ |
392930 |
422165 |
+ |
29236 |
|
NCBI_chr7_b31:562953-757156 |
671861 |
701049 |
AC073957.7:1-194204|+ |
108909 |
138097 |
+ |
29189 |
|
28298 |
28840/29257 (98%) |
89/29257 (0%) |
| CRA_TCAGchr7.v1:706461-1189758 |
1127899 |
1139993 |
GA_x39G1FKSFPU_4:1-483298|+ |
421439 |
433533 |
+ |
12095 |
|
NCBI_chr7_b31:562953-757156 |
700054 |
712179 |
AC073957.7:1-194204|+ |
137102 |
149227 |
+ |
12126 |
|
11612 |
11929/12146 (98%) |
71/12146 (0%) |
| VARIATION |
1139994 |
1140230 |
|
|
|
|
237 |
VARIATION |
VARIATION |
712180 |
712248 |
|
|
|
|
69 |
VARIATION |
|
|
|
| CRA_TCAGchr7.v1:706461-1189758 |
1140231 |
1143720 |
GA_x39G1FKSFPU_4:1-483298|+ |
433771 |
437260 |
+ |
3490 |
|
NCBI_chr7_b31:562953-757156 |
712249 |
715739 |
AC073957.7:1-194204|+ |
149297 |
152787 |
+ |
3491 |
|
3430 |
3469/3493 (99%) |
5/3493 (0%) |
| CRA_TCAGchr7.v1:706461-1189758 |
1143354 |
1179403 |
GA_x39G1FKSFPU_4:1-483298|+ |
436894 |
472943 |
+ |
36050 |
|
NCBI_chr7_b31:562953-757156 |
715522 |
751578 |
AC073957.7:1-194204|+ |
152570 |
188626 |
+ |
36057 |
|
35732 |
35924/36066 (99%) |
25/36066 (0%) |
| CRA_TCAGchr7.v1:706461-1189758 |
1178607 |
1184584 |
GA_x39G1FKSFPU_4:1-483298|+ |
472147 |
478124 |
+ |
5978 |
|
NCBI_chr7_b31:562953-757156 |
751184 |
757156 |
AC073957.7:1-194204|+ |
188232 |
194204 |
+ |
5973 |
|
5725 |
5875/5985 (98%) |
19/5985 (0%) |
| CRA_TCAGchr7.v1:706461-1189758 |
1184585 |
1189758 |
GA_x39G1FKSFPU_4:1-483298|+ |
478125 |
483298 |
+ |
5174 |
|
NCBI_chr7_b31:757157-861441 |
757157 |
762331 |
AC091729.4:1-104285|+ |
1 |
5175 |
+ |
5175 |
|
5148 |
5164/5175 (99%) |
1/5175 (0%) |
| CRA_TCAGchr7.v1:1189759-4656132 |
1189759 |
1190479 |
GA_x5HB7VCL7H0_3:3805-3470178|+ |
3805 |
4525 |
+ |
721 |
|
NCBI_chr7_b31:757157-861441 |
762332 |
763052 |
AC091729.4:1-104285|+ |
5176 |
5896 |
+ |
721 |
|
713 |
717/721 (99%) |
0/721 (0%) |
| CRA_TCAGchr7.v1:1190480-1200777 |
1190480 |
1200777 |
|
|
|
|
10298 |
|
NCBI_chr7_b31:763053-773438 |
763053 |
773438 |
|
|
|
|
10386 |
|
|
|
|
