The Chromosome 7 Annotation Project
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TCAG Gene Summary: CNTNAP2 [GA0525]

Gene / Transcript Structure
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General information
Class Known_Gene
TCAG Gene ID GA0525 [Old ID: HSC7000525]
Gene Symbol CNTNAP2 [HUGO ID: CNTNAP2]
Gene Name Contactin associated protein-like 2
Synonyms CASPR2, NRXN4
Summary Summary: This gene encodes a member of the neurexin family which functions in the vertebrate nervous system as cell adhesion molecules and receptors. This protein, like other neurexin proteins, contains epidermal growth factor repeats and laminin G domains. In addition, it includes an F5/8 type C domain, discoidin/neuropilin- and fibrinogen-like domains, thrombospondin N-terminal-like domains and a putative PDZ binding site. This protein is localized at the juxtaparanodes of myelinated axons and associated with potassium channels. It may play a role in the local differentiation of the axon into distinct functional subdomains. This gene encompasses almost 1.5% of chromosome 7 and is one of the largest genes in the human genome. It may represent a positional candidate gene for the DFNB13 form of nonsyndromic deafness.
Omim Contactin-associated protein-like 2 | 604569
Gene Ontology ●Biological process
   Cell adhesion [GO:0007155]
   Neuronal cell recognition [GO:0008038]
   Transmission of nerve impulse [GO:0019226]
●Cellular component
   Integral to membrane [GO:0016021]
●Molecular function
   Protein binding [GO:0005515]
   Structural molecule activity [GO:0005198]
Transcript CNTNAP2 | T00428 | AF319045.1
External links
LocusLink 26047
RefSeq NM_014141 | NP_054860
GenBank AB020675 [mRNA]
AC004891 [genome]
AC004896 [genome]
AC005378 [genome]
AC006456 [genome]
AF193613 [mRNA]
AF318298 [genome]
AF319045 [mRNA]
AK000960 [mRNA]
PubMed 14702039, 12809671, 11352571, 10624965, 10048485
ABI Gene Expression "Assays-on-Demand™" Hs00204255_m1
Expression Data KIAA0868 | Rt-PCR-ELISA
Affymetrix GeneChip U133A
U95A|37155_at
Transcript Sequence(s)
>T00428 Gene_ID:GA0525,Symbol:CNTNAP2,Class:Known_Gene,BaseSeq:AF319045.1
TGAGGGAAGAAGAGGAAGCGGGAGGAGCTTGGCTTCCTCGCGTATTTGAGGACAGCCCATCTCCCTTCAAGAACCCTACG
GAGAGTCGGACTGCATCTCCGCAGCGAGCTCTTGGAGCGCCGCCGGCCGGGAGGCGAAGGATGCAGGCGGCTCCGCGCGC
CGGCTGCGGGGCAGCGCTCCTGCTGTGGATTGTCAGCAGCTGCCTCTGCAGAGCCTGGACGGCTCCCTCCACGTCCCAAA
AATGTGATGAGCCACTTGTCTCTGGACTCCCCCATGTGGCTTTCAGCAGCTCCTCCTCCATCTCTGGTAGCTATTCTCCC
GGCTATGCCAAGATAAACAAGAGAGGAGGTGCTGGGGGATGGTCTCCATCAGACAGCGACCATTATCAATGGCTTCAGGT
TGACTTTGGCAATCGGAAGCAGATCAGTGCCATTGCAACCCAAGGAAGGTATAGCAGCTCAGATTGGGTGACCCAATACC
GGATGCTCTACAGCGACACAGGGAGAAACTGGAAACCCTATCATCAAGATGGGAATATCTGGGCATTTCCCGGAAACATT
AACTCTGACGGTGTGGTCCGGCACGAATTACAGCATCCGATTATTGCCCGCTATGTGCGCATAGTGCCTCTGGATTGGAA
TGGAGAAGGTCGCATTGGACTCAGAATTGAAGTTTATGGCTGTTCTTACTGGGCTGATGTTATCAACTTTGATGGCCATG
TTGTATTACCATATAGATTCAGAAACAAGAAGATGAAAACACTGAAAGATGTCATTGCCTTGAACTTTAAGACGTCTGAA
AGTGAAGGAGTAATCCTGCACGGAGAAGGACAGCAAGGAGATTACATTACCTTGGAACTGAAAAAAGCCAAGCTGGTCCT
CAGTTTAAACTTAGGAAGCAACCAGCTTGGCCCCATATATGGCCACACATCAGTGATGACAGGAAGTTTGCTGGATGACC
ACCACTGGCACTCTGTGGTCATTGAGCGCCAGGGGCGGAGCATTAACCTCACTCTGGACAGGAGCATGCAGCACTTCCGT
ACCAATGGAGAGTTTGACTACCTGGACTTGGACTATGAGATAACCTTTGGAGGCATCCCTTTCTCTGGCAAGCCCAGCTC
CAGCAGTAGAAAGAATTTCAAAGGCTGCATGGAAAGCATCAACTACAATGGCGTCAACATTACTGATCTTGCCAGAAGGA
AGAAATTAGAGCCCTCAAATGTGGGAAATTTGAGCTTTTCTTGTGTGGAACCCTATACGGTGCCTGTCTTTTTCAACGCT
ACAAGTTACCTGGAGGTGCCCGGACGGCTTAACCAGGACCTGTTCTCAGTCAGTTTCCAGTTTAGGACATGGAACCCCAA
TGGTCTCCTGGTCTTCAGTCACTTTGCGGATAATTTGGGCAATGTGGAGATTGACCTCACTGAAAGCAAAGTGGGTGTTC
ACATCAACATCACACAGACCAAGATGAGCCAAATCGATATTTCCTCAGGTTCTGGGTTGAATGATGGACAGTGGCACGAG
GTTCGCTTCCTAGCCAAGGAAAATTTTGCTATTCTCACCATCGATGGAGATGAAGCATCAGCAGTTCGAACTAATAGTCC
CCTTCAAGTTAAAACTGGCGAGAAGTACTTTTTTGGAGGTTTTCTGAACCAGATGAATAACTCAAGTCACTCTGTCCTTC
AGCCTTCATTCCAAGGATGCATGCAGCTCATTCAAGTGGACGATCAACTTGTAAATTTATACGAAGTGGCACAAAGGAAG
CCGGGAAGTTTCGCGAATGTCAGCATTGACATGTGTGCGATCATAGACAGATGTGTGCCCAATCACTGTGAGCATGGTGG
AAAGTGCTCGCAAACATGGGACAGCTTCAAATGCACTTGTGATGAGACAGGATACAGTGGGGCCACCTGCCACAACTCTA
TCTACGAGCCTTCCTGTGAAGCCTACAAACACCTAGGACAGACATCAAATTATTACTGGATAGATCCTGATGGCAGCGGA
CCTCTGGGGCCTCTGAAAGTTTACTGCAACATGACAGAGGACAAAGTGTGGACCATAGTGTCTCATGACTTGCAGATGCA
GACGCCTGTGGTCGGCTACAACCCAGAAAAATACTCAGTGACACAGCTCGTTTACAGCGCCTCCATGGACCAGATAAGTG
CCATCACTGACAGTGCCGAGTACTGCGAGCAGTATGTCTCCTATTTCTGCAAGATGTCAAGATTGTTGAACACCCCAGAT
GGAAGCCCTTACACTTGGTGGGTTGGCAAAGCCAACGAGAAGCACTACTACTGGGGAGGCTCTGGGCCTGGAATCCAGAA
ATGTGCCTGCGGCATCGAACGCAACTGCACAGATCCCAAGTACTACTGTAACTGCGACGCGGACTACAAGCAATGGAGGA
AGGATGCTGGTTTCTTATCATACAAAGATCACCTGCCAGTGAGCCAAGTGGTGGTTGGAGATACTGACCGTCAAGGCTCA
GAAGCCAAATTGAGCGTAGGTCCTCTGCGCTGCCAAGGAGACAGGAATTATTGGAATGCCGCCTCTTTCCCAAACCCATC
CTCCTACCTGCACTTCTCTACTTTCCAAGGGGAAACTAGCGCTGACATTTCTTTCTACTTCAAAACATTAACCCCCTGGG
GAGTGTTTCTTGAAAATATGGGAAAGGAAGATTTCATCAAGCTGGAGCTGAAGTCTGCCACAGAAGTGTCCTTTTCATTT
GATGTGGGAAATGGGCCAGTAGAGATTGTAGTGAGGTCACCAACCCCTCTCAACGATGACCAGTGGCACCGGGTCACTGC
AGAGAGGAATGTCAAGCAGGCCAGCCTACAGGTGGACCGGCTACCGCAGCAGATCCGCAAGGCCCCAACAGAAGGCCACA
CCCGCCTGGAGCTCTACAGCCAGTTATTTGTGGGTGGTGCTGGGGGCCAGCAGGGCTTCCTGGGCTGCATCCGCTCCTTG
AGGATGAATGGGGTGACACTTGACCTGGAGGAAAGAGCAAAGGTCACATCTGGGTTCATATCCGGATGCTCGGGCCATTG
CACCAGCTATGGAACAAACTGTGAAAATGGAGGCAAATGCCTAGAGAGATACCACGGTTACTCCTGCGATTGCTCTAATA
CTGCATATGATGGAACATTTTGCAACAAAGATGTTGGTGCATTTTTTGAAGAAGGGATGTGGCTACGATATAACTTTCAG
GCACCAGCAACAAATGCCAGAGACTCCAGCAGCAGAGTAGACAACGCTCCCGACCAGCAGAACTCCCACCCGGACCTGGC
ACAGGAGGAGATCCGCTTCAGCTTCAGCACCACCAAGGCGCCCTGCATTCTCCTCTACATCAGCTCCTTCACCACAGACT
TCTTGGCAGTCCTCGTCAAACCCACTGGAAGCTTACAGATTCGATACAACCTGGGTGGCACCCGAGAGCCATACAATATT
GACGTAGACCACAGGAACATGGCCAATGGACAGCCCCACAGTGTCAACATCACCCGCCACGAGAAGACCATCTTTCTCAA
GCTCGATCATTATCCTTCTGTGAGTTACCATCTGCCAAGTTCATCCGACACCCTCTTCAATTCTCCCAAGTCGCTCTTTC
TGGGAAAAGTTATAGAAACAGGGAAAATTGACCAAGAGATTCACAAATACAACACCCCAGGATTCACTGGTTGCCTCTCC
AGAGTCCAGTTCAACCAGATCGCCCCTCTCAAGGCCGCCTTGAGGCAGACAAACGCCTCGGCTCACGTCCACATCCAGGG
CGAGCTGGTGGAGTCCAACTGCGGGGCCTCGCCGCTGACCCTCTCCCCCATGTCGTCCGCCACCGACCCCTGGCACCTGG
ATCACCTGGATTCAGCCAGTGCAGATTTTCCATATAATCCAGGACAAGGCCAAGCTATAAGAAATGGAGTCAACAGAAAC
TCGGCTATCATTGGAGGCGTCATTGCTGTGGTGATTTTCACCATCCTGTGCACCCTGGTCTTCCTGATCCGGTACATGTT
CCGCCACAAGGGCACCTACCATACCAACGAAGCAAAGGGGGCGGAGTCGGCAGAGAGCGCGGACGCCGCCATCATGAACA
ACGACCCCAACTTCACAGAGACCATTGATGAAAGCAAAAAGGAATGGCTCATTTGAGGGGTGGCTACTTGGCTATGGGAT
AGGGAGGAGGGAATTACTAGGGAGGAGAGAAAGGGACAAAAGCACCCTGCTTCATACTCTTGAGCACATCCTTAAAATAT
CAGCACAAGTTGGGGGAGGCAGGCAATGGAATATAATGGAATATTCTTGAGACTGATCACAAAAAAAAAAAAAACCTTTT
TAATATTTCTTTATAGCTGAGTTTTCCCTTCTGTATCAAAACAAAATAATACAAAAAATGCTTTTAGAGTTTAAGCAATG
GTTGAAATTTGTAGGTACTATCTGTCTTATTTTGTGTGTGTTTAGAGGTGTTCTAAAGACCCGTGGTAACAGGGCAAGTT
TTCTACGTTTTTAAGAGCCCTTAGAACGTGGGTATTTTTTTTCTTGAGAAAAGCTAATGCACCTACAGATGGCCCCCAAC
ATTCTCTTCCTTTTGCTTCTAGTCAACCTTAATGGGCTGTTACAGAAACTAGTTCGTGTTTATATACTATTTCCTTTGAT
GTCCTATAAGTCGGAAAAGAAAGGGGCAAAGAGAACCTATTATTTGCCAGTTTTTAAGCAGAGCTCAATCTATGCCAGCT
CTCTGGCATCTGGGGTTCCTGACTGATACCAGCAGTTGAAGGAAGAGAGTGCATGGCACCTGGTGTGTAACGACACAATC
AGCACAACTGGAGAGAGGCATTAAAGAACCAGGGAAGGTAGTTTGATTTTTCATTGAATTCTACAAGCTAATATTGTTCC
ACGTATGTAGTCTTAGACCAATAGCTGTAACTATCAGCTGCAATACCATGGTGACCAGCTGTTACAAAAGATTTTTTCCT
GTTTTATCTGAAACATACTGGATTTATATATGTATAAGCGCCTCAATGGGGAATTAGAGCCAGATGTTATGATTTGTTTG
CTCTTTTTCTTTTATAGTTATAGCAAAAATATGGATAATTTCTAGTGAATGCATAAATTAGGTTGCGTTTCTTATTTTGC
TTTAAATCTCTGGTAGTTTTTCCACCCCTGTGACACAATCCTAATAGACAGTGTCCTGTAAATGGACACAACACAATAAA
GTCAAGTTATTATTGCTGTTACTCTGGATGATATGGAAAACACTGCCATATTTTAAATCAACTACTCCACGTGTTTTTCC
ATCCAATCACACTGCTGTGATTCAGGGATCTTTCTTCTAAAACGGACACATTTGAACCTCAGGTTCATCACAAACCTGGT
ACCTGTTGCTTCCCAGAGGATGGAGAAGTGTAGTTAATCACACCTCTTAGTTTAATCTGAAATCTTGACCCAGTTATTTA
ACAAATAAATACCTCATTGATTATATTTAAAAGTAATACACTTCCTGTAAACAAATGGGGACAATGCATCCAAAAAATCT
TTTTAAACAGATTACACAAAAATTATTTCCAGAAAGGCTACCATTTATCATCATTATATTTCAAGCCTCTTATACTTAAT
AAGCACTTTCTAAAAAGTCTTGAGATCCCACCATTCTGAGGAATTCAATATGATCACTTTTTCCTTCTTTGCCTGGGAGA
GGTTAAGAGGCGGTTTCGAAGGTATAGATGCTATTGTTCTGATGGCCCGGCTGAATAAAATGGAAATTCTAGTTTGTTAG
AATTATGCATTCTTTTTCAAGATTCTCAGTGTGCCTAACTTATTGGAGCACATCAGTTTCTTGGGTAATGGAAAACATTA
CCTAGAGTTGCCAGTGGCACATTACACCAGTACAGAGCACATTCCAAAGGAGACATTGGACCAGTTAATTCCCATACAAG
TCAAGGTAACAGAACAAAAGGGAATCCTGATGCCCTTTTACCATTGCTGGTTGAGCTCAGGCACTGTCATGGACACCCTT
AATTTTAAAAGGTTTTAATCATTCTTCTATAAAATACATTTAAAATGGAAAAATACTTAATATCACTAAATATCAGAACA
ATGTAACATTTACAAATGACATATTGAAAGCAAAGGCTGTTTTATTTAGCCAAGATGATTACCATTAGGAGTTACTTTAT
GTATTGTTGAAAGCAAATTTTAAACATGATGTTTTAGAAGTGTTTCTGATTTTTAAACCTGGTTTACAGGTATTACTTCT
GCACTTACCAAATAATGCCAGATGGAAATTTATTATTTCTTGCAATTCCCGTGATAGCTCTGTTCTTTATGCATTGTCTC
AACACTTTCCCTTTTTTCCCAAAATGAGTAGAGAATTAAAGCCACCCAAAACAGCTTCTGCTACTAAAATGTTCTCATCC
TTTCTCCTCCCTCTCCTTTTCCTGCCACAAAAGGTGAAAAATGAGATCCAATCCTCTCACCAAAATTTCAAACCTAGGAC
ACTGGAATGACTGCAGGGATCAGTGGTTCTCCCATATCACCATCAATTAAGACATATAGGACACTGTCTTCCTTCAAGAG
GGTTACAATGTGGCCATCAGACAGGAAACCAAACGGTGGATAAAGTATTAAGTAACTAAGTGCCAAATAAATGCTGGAAA
TCTTGACCTCTCCTTGGGATTATGGGTGTAACAAAAATCCCTACATCTGTTTATGAAGGCCATATTCAGTACATTTTAAA
TGGTAAATAATCTGTTTATGTGAAGAAAAAGAATTAAGTCTTTCTTCCAACTCTCTCCTTGGATAGCCTAGCACAGTGCA
GCCTCCATAACCATGACATTCCCGCCCAAGCTCTCAGTGCCTAATCCTGCTTTGTCATTCACATCTCACAAAATCTTGAC
ATCTTACATTCCAATACATTATCAAGCAAGCACAAGTATGCTGGTAGTAGCCTCTTTAAATAATATGTATAGACAACAAC
AACGACAAAAAATAGACTGTTTTAAAGTTTCAGGGAAAGTTGGTGGCTGATTTAAAGTTGTGCAGGAAACATCTTCTGTG
TATGAAGCAAATGTCGATGTTTTGAAAAGCTAGGAGATGACTTTGAATGAATGCAAGGTTAGTGAGATCCTAAGCTCTCA
AAATAGCATATTCCCTAGAGCTCAAGAAAGCTGGTCCAGGAGGTTGAAAAAGCTATTTTGTTGTTAAATTATTTTCTGGC
CCTTCTTAATATTTAAAAATGTATTTCCCCTTGTGGCTTTCAACCACCTGCTCAAAAAAAGAGACTTGTTACATGAAAGT
TTTCATTAAAGAGCTGAAAACAAGAATTTAGAGAGCCATTCCTAGAAAATGTCCTACTGCCCTGCATTTGACAAACAAGC
ATCCTTTACTAACAAGAGCAGGAATTCAGAGGCACAAGAAAAAGCATTGGCATGAGCCAAAGAGTCTGTCTTAATGTTAC
TTTTGAAAATCTGCTGAGCGGCCACCATATGCAGGCTGAGAGCTGGGCACAGGCGAAGCCATTGGAAGCACTTCAGGAAC
AAGCACACAGCTGTGGGACTTGAACATGCAAGTGTTCAGGTTGTGTCAAGAAGCTTTTCTTTCCTTCTATGATGGAATCT
GTTCTTTTCTATCCTACTTTTTTCTCTCTTCCTCTCCTCACCACATTATACCCTGCTCTTACGCAGTAAACGTTTTAATG
GCCCGTTTATGTCTCATGCCTCCAAACAACACTGAATTTGAAACCCCCCATTTTTTCTTTTCACCACCCTGTTGAGCAAT
TTTCCCAAAAAAAGGGCAGCAATTATTAAATTGAATTCAAGTTTCTAGATTTTACTAAGTTTTATTTTGTCAGGTTTTTT
AAATTTTTTCAGTGAGCGTGGTGACTGCAGAGGTTAGTGCTGTGAAAAGCTGGGCTAAATATTCTTTCTGTAAAGTCAAA
CAGGATTCCATCCCCTGTGAAATAACACAAAATTTCACTCTCTAAAAGCAACAGCATGTAAACTAGAATGAAAGAAGGAA
ATTATGTACGTATGCCTAATATTCTTTGTGAATGTCTTTCATTTAACTAAAATTATATTAGAAACCAGATTGATAAATAA
AAAATTCAAAGTAGTTTTAATTATCCT

Note: Some data originated from NCBI's LocusLink.