The Chromosome 7 Annotation Project
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Overlapping Transcripts on Chromosome 7

List of overlapping transcripts. The two overlapping transcriptional units and their relative orientation to each other is described (determined by NCBI Blast-2-seq). (*Imprinted genes are shown in bold, with overlapping transcript pairs shaded grey). The genomic context of the gene structures are displayed in the Genome Browser at http://www.chr7.org.
Strand  Gene Symbol  Gene Class  Accession #  Strand  Gene Symbol  Gene Class  Accession #  Category 
-  MGC11257  Known_Gene  BC006224  +  LOC115330  Known_Gene  BC014241  Structurally overlapping 
-  MGC11257  Known_Gene  BC006224  +  GPR30  Known_Gene  AF015257  Structurally overlapping 
-  FLJ39498  Known_Gene  AK096817  -  FLJ90562  Known_Gene  AK075043  Sense overlapping 
-  MAD1L1  Known_Gene  BC009964  +  FLJ38166  Novel_Gene  AK095485  Structurally overlapping 
-  KIAA1849  Known_Gene  AB058752  -  PAPOLB  Known_Gene  BC036653  Structurally overlapping 
-  KIAA1856  Known_Gene  AB058759  -  TNRC18  Known_Gene  U80753  Structurally overlapping 
+  JTV1  Known_Gene  NM_006303  -  HRI  Known_Gene  AB037790  Antisense overlapping 
+  DNAH11  Known_Gene  AJ320497  -  FLJ38646  Known_Gene  AK095965  Antisense overlapping 
-  GFR  Known_Gene  D87467  -  DKFZp667A016  Known_Gene  AL833195  Sense overlapping 
-  HOXA3_variant_2  Known_Gene  NM_153631  +  FLJ31668  Novel_Gene  AK056230  Antisense overlapping 
+  FLJ31668  Novel_Gene  AK056230  +  IMAGE:5180590  Known_Gene  BC035889  Sense overlapping 
+  IMAGE:5180590  Known_Gene  BC035889  -  HOXA4  Known_Gene  M74297  Antisense overlapping 
-  HOXA6  Known_Gene  NM_024014  +  FLJ34614  Known_Gene  AK091933  Antisense overlapping 
+  FLJ33300  Known_Gene  AK090619  -  LOC89231  Known_Gene  AK026768  Structurally overlapping 
-  KIAA0895  Known_Gene  BC028678  +  ANLN  Known_Gene  AF273437  Antisense overlapping 
+  KIAA0322  Known_Gene  AB002320  +  FLJ35943  Novel_Gene  AK093262  Structurally overlapping 
-  PKD1L1  Known_Gene  AB061683  +  FLJ21075  Known_Gene  NM_025031  Structurally overlapping 
-  PKD1L1  Known_Gene  AB061683  +  FLJ34738  Novel_Gene  AK092057  Antisense overlapping 
-  DDC  Known_Gene  M88700  +  FLJ32838  Novel_Gene  AK057400  Antisense overlapping 
-  GRB10*  Known_Gene  D86962  +  FLJ40093  Novel_Gene  AK097412  Structurally overlapping 
-  ZNF117  Known_Gene  NM_024498  -  H-plk  Known_Gene  M55422  Sense overlapping 
+  IMAGE:5093832  Known_Gene  BC027734  +  FLJ31298  Novel_Gene  AK055860  Structurally overlapping 
+  SDCR2A  Known_Gene  AK001762  -  hPMS6  Known_Gene  D38438  Structurally overlapping 
-  FLJ39672  Novel_Gene  AK096991  +  WBSCR17  Known_Gene  AF410457  Antisense overlapping 
+  POM121  Known_Gene  AB014518  -  WBSCR20C_variant_1  Known_Gene  NM_032158  Antisense overlapping 
+  POM121  Known_Gene  AB014518  -  WBSCR20C_variant_4  Known_Gene  NM_149379  Antisense overlapping 
-  PMS2L14  Known_Gene  AB017005  -  hPMS4  Known_Gene  D38436  Sense overlapping 
-  PMS2L14  Known_Gene  AB017005  -  BC022013  Novel_Gene  BC022013  Structurally overlapping 
-  PMS2L14  Known_Gene  AB017005  +  WBSCR20B  Known_Gene  AF416610  Structurally overlapping 
-  PMS2L14  Known_Gene  AB017005  -  PMS2L9  Known_Gene  U38979  Sense overlapping 
-  PMS2L14  Known_Gene  AB017005  -  PMS5  Known_Gene  D38437  Sense overlapping 
+  IMAGE:5273288  Known_Gene  BC036053  -  FGL2  Known_Gene  Z36531  Structurally overlapping 
-  AIP1  Known_Gene  NM_012301  +  MGC:34774  Novel_Gene  BC027852  Structurally overlapping 
-  AIP1  Known_Gene  NM_012301  -  AF521131  Partial_Gene  AF521131  Structurally overlapping 
+  DMTF1  Known_Gene  AF084530  -  MGC4175  Known_Gene  BC002837  Antisense overlapping 
-  ABCB1  Known_Gene  M14758  +  RPIB9  Known_Gene  NM_138290  Structurally overlapping 
-  MCFP  Known_Gene  AF125531  +  ASK  Known_Gene  AB028069  Antisense overlapping 
+  FLJ32110  Novel_Gene  AK056672  -  MGC:26647  Known_Gene  BC028365  Structurally overlapping 
+  GNGT1  Known_Gene  BC030956  -  TFPI2  Known_Gene  AK092499  Antisense overlapping 
+  PPP1R9A*  Known_Gene    -  FLJ33602  Novel_Gene    Antisense overlapping 
-  IMAGE:3842949  Known_Gene  BC013888  +  FLJ30064  Novel_Gene  AK054626  Structurally overlapping 
-  IMAGE:3842949  Known_Gene  BC013888  -  IMAGE:3350750  Novel_Gene  BC000204  Structurally overlapping 
+  TRRAP  Known_Gene  AF076974  +  FLJ10671  Novel_Gene  AK001533  Sense overlapping 
+  FLJ10671  Novel_Gene  AK001533  -  KIAA1625  Known_Gene  AB046845  Antisense overlapping 
+  G10  Known_Gene  BC022821  -  KIAA0632  Known_Gene  AB014532  Antisense overlapping 
+  ZNF38  Known_Gene  AK075324  -  ZNF3_variant_1  Known_Gene  NM_017715  Antisense overlapping 
+  AP4M1  Known_Gene  AF020796  -  TAF6_variant_1  Known_Gene  NM_005641  Antisense overlapping 
+  STAG3  Known_Gene  AJ007798  +  DKFZp434F086  Known_Gene  AL834317  Sense overlapping 
+  STAG3  Known_Gene  AJ007798  -  FLJ34099  Novel_Gene  AK091418  Antisense overlapping 
+  DKFZp434F086  Known_Gene  AL834317  -  FLJ34099  Novel_Gene  AK091418  Structurally overlapping 
+  DKFZp434F086  Known_Gene  AL834317  +  PILRB  Known_Gene  AF161081  Sense overlapping 
+  RAB-R  Known_Gene  BC017329  +  IRS3L  Known_Gene  AK090744  Sense overlapping 
+  FBXO24_variant_1  Known_Gene  NM_033506  -  FLJ40386  Novel_Gene  AK097705  Antisense overlapping 
-  FLJ40386  Novel_Gene  AK097705  +  PCOLCE  Known_Gene  L33799  Antisense overlapping 
+  MUC3B  Known_Gene  AB038783  -  FLJ39484  Novel_Gene  AK096803  Antisense overlapping 
+  FLJ40957  Novel_Gene  AK098276  +  FLJ13902  Known_Gene  AK023964  Sense overlapping 
-  POLR2J2B  Known_Gene  AJ277740  +  TCAG_hCT1815882  Partial_Gene  hCT1815882  Structurally overlapping 
-  FLJ40218  Known_Gene  AK097537  +  P37NB  Known_Gene  U32907  Antisense overlapping 
-  FLJ40218  Known_Gene  AK097537  +  IMAGE:5404753  Partial_Gene  BC036938  Structurally overlapping 
-  DKFZp434E092  Known_Gene  AL834175  +  S100A14  Known_Gene  NM_021039  Structurally overlapping 
+  PMPCB  Known_Gene  AF054182  -  ZRF1  Known_Gene  X98260  Antisense overlapping 
+  FLJ11785  Known_Gene  AF317622  -  TCAG_hCT1818545  Known_Gene  hCT1818545  Antisense overlapping 
-  COG5  Known_Gene  AF058718  +  GPR22  Known_Gene  U66581  Structurally overlapping 
-  TCAG_hCT1953978  Known_Gene  hCT1953978  -  LAMB4  Known_Gene  THC1142615  Sense overlapping 
-  IMMP2L  Known_Gene  AF359563  +  FLJ11129  Partial_Gene  AK001991  Structurally overlapping 
-  IMMP2L  Known_Gene  AF359563  +  TCAG_hCT1645734  Known_Gene  hCT1645734  Structurally overlapping 
-  ST7OT1  Known_Gene  AF400039  +  RAY1_variant_a  Known_Gene  AF234882  Antisense overlapping 
+  RAY1_variant_a  Known_Gene  AF234882  -  ST7OT2_variant_1  Known_Gene  AF400045  Antisense overlapping 
+  ST7_variant_a  Known_Gene  AY009152  +  ST7OT3  Known_Gene  AF400044  Sense overlapping 
-  CADPS2  Known_Gene  CADPS2  -  LOC168433  Known_Gene  AF447589  Structurally overlapping 
-  CADPS2  Known_Gene  CADPS2  -  MGC:35222  Novel_Gene  BC029264  Structurally overlapping 
+  p100  Known_Gene  U22055  -  NAG14  Known_Gene  AF196976  Structurally overlapping 
-  FLJ33365  Novel_Gene  AK090684  +  ATP6V1F  Known_Gene  D49400  Antisense overlapping 
-  UBE2H  Known_Gene  Z29330  +  CATR1  Known_Gene  U25433  Structurally overlapping 
+  CPA5  Known_Gene  AF384667  -  FLJ40591  Known_Gene  AK097910  Antisense overlapping 
+  MEST_isoform_2*  Known_Gene  MEST_isoform_2  -  MESTIT1*  Known_Gene  MESTIT1  Structurally overlapping 
+  MEST*  Known_Gene  D78611  -  COPG2  Known_Gene  AF157833  Antisense overlapping 
-  COPG2  Known_Gene  AF157833  +  COPG2IT1*  Known_Gene  COPG2IT1  Structurally overlapping 
-  KIAA1550  Known_Gene  AB046770  -  FLJ38287  Novel_Gene  AK095606  Sense overlapping 
+  FLJ11000  Known_Gene  AK001862  -  MGC5242  Known_Gene  BC000168  Antisense overlapping 
-  HSPC049  Known_Gene  AF161534  +  FLJ32860  Novel_Gene  AK057422  Structurally overlapping 
+  CHRM2  Known_Gene  AL832585  -  FLJ40151  Partial_Gene  AK097470  Structurally overlapping 
-  ATP6V0A4_variant_1  Known_Gene  NM_020632  +  FLJ31279  Partial_Gene  AK055841  Antisense overlapping 
+  CGI-74  Known_Gene  AF151832  +  pp12708  Novel_Gene  AF318327  Structurally overlapping 
-  THC1179197  Known_Gene  THC1179197  -  HIPK2  Known_Gene  AF208291  Sense overlapping 
-  FLJ40852  Known_Gene  AK098171  +  THC1158528  Novel_Gene  THC1158528  Antisense overlapping 
-  EPHA1  Known_Gene  M18391  +  DKFZp686O0656  Known_Gene  AL833583  Structurally overlapping 
+  DKFZp686O0656  Known_Gene  AL833583  +  TAS2R41  Novel_Gene  AF494232  Structurally overlapping 
+  TCAG_hCT1964447  Known_Gene  hCT1964447  +  DKFZp667J212  Known_Gene  AL832862  Sense overlapping 
-  FLJ12700  Known_Gene  NM_024910  +  FLJ32307  Novel_Gene  AK056869  Structurally overlapping 
+  TCAG_hCT7210  Known_Gene  hCT7210  +  FLJ36112  Known_Gene  AK093431  Sense overlapping 
-  LR8  Known_Gene  BC004358  +  HCA112  Known_Gene  BC008303  Structurally overlapping 
+  NOS3  Known_Gene  M95296  -  FLJ14885  Novel_Gene  AK027791  Antisense overlapping 
+  CENTG3  Known_Gene  AF359283  +  FLJ34452  Known_Gene  AK091771  Structurally overlapping 
+  NUB1  Known_Gene  AF300717  -  FLJ32062  Known_Gene  AK056624  Antisense overlapping 
-  TCAG_hCT10662  Partial_Gene  hCT10662  -  LOC285975  Known_Gene  XM_212109  Structurally overlapping 
+  FLJ32047  Novel_Gene  AK056609  -  PAXIP1L  Known_Gene  U80735  Antisense overlapping 
-  IMAGE:5287138  Partial_Gene  BC031272  +  HTR5A  Known_Gene  AF498985  Antisense overlapping 
-  PTPRN2_variant_1  Known_Gene  NM_002847  +  IMAGE:4475530  Novel_Gene  BC034557  Structurally overlapping 
-  VIPR2  Known_Gene  X95097  +  IMAGE:4903629  Novel_Gene  BC024307  Antisense overlapping